Five3_Genomics_Paradigm
Created By Kyle Ellrott kellrott
#! Paradigm with Link-Learning ###! Run Details Pathway: five3_pid_120912_pathway.tab EM Converged after 23 iterations ###! File Descriptions merge_merged_reals.txt contains the actual tumor samples (3,532 samples, 17348 features) merge_merged_reals_filtered.txt is the above file with a filter requiring at least a single sample have an IPL >= 0.05 (3,532 samples, 13480 features) merge_merged_nulls.txt contains 5 null samples derived from each of the real samples, for significance testing (17,660 samples, 17348 features) merge_merged_loglike.txt contains the sample log-likelihoods for the reals and the nulls (21,192 samples, 1 score) ##! Log-Likelihood Comparison to Nulls Sample TCGA-AB-2917-03A failed loglikelihood. Real: -9998.81 Nulls: [-10044.5, -10034.1, -10049.799999999999, -10068.6, -9959.7399999999998]
Sample TCGA-AK-3451-01A failed loglikelihood. Real: -10193.1 Nulls: [-10160.799999999999, -10248.799999999999, -10181.0, -10196.4, -10213.6]
Sample TCGA-AB-2863-03A failed loglikelihood. Real: -9793.27 Nulls: [-9737.5499999999993, -9712.4200000000001, -9796.4099999999999, -9745.7800000000007, -9739.1599999999999]
Sample TCGA-35-4122-01A failed loglikelihood. Real: -10395.5 Nulls: [-10387.299999999999, -10418.1, -10359.9, -10409.799999999999, -10364.299999999999]
Sample TCGA-05-5428-01A failed loglikelihood. Real: -10209.7 Nulls: [-10194.4, -10239.700000000001, -10216.5, -10227.200000000001, -10190.6]
Sample TCGA-AB-2842-03A failed loglikelihood. Real: -9843.95 Nulls: [-9831.0699999999997, -9830.8099999999995, -9898.6200000000008, -9856.9400000000005, -9899.6100000000006]
Sample TCGA-AG-3883-01A failed loglikelihood. Real: -10504.9 Nulls: [-10493.700000000001, -10498.299999999999, -10518.700000000001, -10608.4, -10545.6]
Sample TCGA-A5-A0GJ-01A failed loglikelihood. Real: -10447.6 Nulls: [-10412.9, -10445.0, -10418.299999999999, -10465.6, -10415.799999999999]
Sample TCGA-AG-3878-01A failed loglikelihood. Real: -10256.8 Nulls: [-10292.6, -10255.299999999999, -10277.0, -10228.4, -10311.299999999999]
Sample TCGA-BA-4074-01A failed loglikelihood. Real: -10375.7 Nulls: [-10365.299999999999, -10407.1, -10466.6, -10412.4, -10425.6]
Sample TCGA-AA-3715-01A failed loglikelihood. Real: -10393.1 Nulls: [-10390.799999999999, -10465.1, -10411.9, -10448.200000000001, -10428.5]
Sample TCGA-AB-2822-03A failed loglikelihood. Real: -9790.69 Nulls: [-9781.75, -9787.1100000000006, -9798.5400000000009, -9802.8700000000008, -9786.2399999999998]
Sample TCGA-D1-A168-01A failed loglikelihood. Real: -10165.7 Nulls: [-10153.299999999999, -10270.200000000001, -10191.700000000001, -10218.1, -10166.5]
Sample TCGA-AB-2867-03A failed loglikelihood. Real: -9859.27 Nulls: [-9952.0100000000002, -9922.2000000000007, -9889.6800000000003, -9948.1399999999994, -9847.6299999999992]
Sample TCGA-AB-2849-03A failed loglikelihood. Real: -10139.7 Nulls: [-10154.9, -10070.799999999999, -10097.5, -10176.0, -10127.700000000001]
Sample TCGA-AG-3882-01A failed loglikelihood. Real: -10528.8 Nulls: [-10469.1, -10483.0, -10444.1, -10538.299999999999, -10472.700000000001]
Sample TCGA-18-3417-01A failed loglikelihood. Real: -10098.3 Nulls: [-10152.299999999999, -10141.299999999999, -10131.200000000001, -10052.0, -10118.6]
Sample TCGA-AB-2914-03A failed loglikelihood. Real: -9841.15 Nulls: [-9812.5200000000004, -9788.6200000000008, -9844.8099999999995, -9828.6599999999999, -9816.1900000000005]
Sample TCGA-AB-2913-03A failed loglikelihood. Real: -9851.83 Nulls: [-9936.3099999999995, -9836.4599999999991, -9941.8899999999994, -9947.0, -9855.7000000000007]
Sample TCGA-AB-2916-03A failed loglikelihood. Real: -9788.97 Nulls: [-9798.1000000000004, -9758.2700000000004, -9785.4400000000005, -9798.9200000000001, -9806.8700000000008]
Sample TCGA-AA-3947-01A failed loglikelihood. Real: -10336.8 Nulls: [-10252.1, -10241.9, -10262.200000000001, -10272.0, -10267.200000000001]
Sample TCGA-AA-3514-01A failed loglikelihood. Real: -10289.1 Nulls: [-10272.9, -10266.799999999999, -10240.1, -10276.299999999999, -10317.200000000001]
Sample TCGA-AG-3728-01A failed loglikelihood. Real: -10500.1 Nulls: [-10523.5, -10514.299999999999, -10499.200000000001, -10468.200000000001, -10503.0]
Sample TCGA-AB-2818-03A failed loglikelihood. Real: -9922.2 Nulls: [-9951.1900000000005, -9935.7999999999993, -9932.6200000000008, -9911.75, -9969.6200000000008]
Sample TCGA-BA-4075-01A failed loglikelihood. Real: -10133.2 Nulls: [-10192.0, -10148.700000000001, -10154.6, -10118.6, -10122.799999999999]
Sample TCGA-50-5068-01A failed loglikelihood. Real: -10405.2 Nulls: [-10408.700000000001, -10402.200000000001, -10444.4, -10387.6, -10372.799999999999]
Sample TCGA-AB-2808-03A failed loglikelihood. Real: -9932.16 Nulls: [-9912.0499999999993, -9893.1299999999992, -9873.7399999999998, -9875.7900000000009, -9909.9200000000001]
Sample TCGA-CV-6436-01A failed loglikelihood. Real: -10191.5 Nulls: [-10111.299999999999, -10213.799999999999, -10107.200000000001, -10135.299999999999, -10151.0]
Sample TCGA-43-3920-01A failed loglikelihood. Real: -10286.2 Nulls: [-10303.700000000001, -10272.700000000001, -10287.299999999999, -10321.700000000001, -10264.4]
Sample TCGA-50-5066-01A failed loglikelihood. Real: -10431.9 Nulls: [-10407.799999999999, -10426.700000000001, -10453.0, -10440.200000000001, -10406.5]
Sample TCGA-05-5420-01A failed loglikelihood. Real: -10353.7 Nulls: [-10392.4, -10410.5, -10342.6, -10385.4, -10429.0]
Sample TCGA-B0-4813-01A failed loglikelihood. Real: -10398.6 Nulls: [-10473.200000000001, -10398.4, -10472.5, -10485.6, -10510.0]
Sample TCGA-AA-3527-01A failed loglikelihood. Real: -10325.5 Nulls: [-10231.0, -10220.0, -10254.0, -10256.799999999999, -10288.700000000001]
Sample TCGA-C4-A0F0-01A failed loglikelihood. Real: -9953.22 Nulls: [-9957.2099999999991, -9910.1800000000003, -10008.6, -9958.6700000000001, -9963.5400000000009]
Sample TCGA-D1-A169-01A failed loglikelihood. Real: -10521.3 Nulls: [-10554.4, -10550.200000000001, -10473.6, -10513.799999999999, -10531.200000000001]
Sample TCGA-CZ-5989-01A failed loglikelihood. Real: -10142.2 Nulls: [-10070.5, -10014.9, -10042.6, -10054.4, -10058.299999999999]
Sample TCGA-AA-3684-01A failed loglikelihood. Real: -10631.9 Nulls: [-10582.299999999999, -10608.5, -10559.700000000001, -10602.0, -10605.1]
Sample TCGA-B4-5832-01A failed loglikelihood. Real: -10385.4 Nulls: [-10227.9, -10178.9, -10238.0, -10242.700000000001, -10211.0]
Sample TCGA-A5-A0GX-01A failed loglikelihood. Real: -10516.4 Nulls: [-10514.6, -10519.4, -10544.5, -10560.4, -10552.200000000001]
Sample TCGA-B8-4146-01B failed loglikelihood. Real: -10218.5 Nulls: [-10091.4, -10054.0, -10066.700000000001, -10091.299999999999, -10090.4]
Sample TCGA-G2-A2EO-01A failed loglikelihood. Real: -10244.0 Nulls: [-10276.200000000001, -10242.5, -10314.0, -10242.6, -10254.700000000001]
Sample TCGA-AB-2828-03A failed loglikelihood. Real: -9782.16 Nulls: [-9799.6599999999999, -9737.0699999999997, -9810.2000000000007, -9804.7099999999991, -9800.0200000000004]
Sample TCGA-AB-2984-03A failed loglikelihood. Real: -9871.08 Nulls: [-9765.6800000000003, -9811.6299999999992, -9823.1599999999999, -9822.9899999999998, -9827.1700000000001]
Sample TCGA-AA-3672-01A failed loglikelihood. Real: -10403.4 Nulls: [-10353.5, -10359.4, -10359.200000000001, -10332.5, -10304.9]
Sample TCGA-AG-3885-01A failed loglikelihood. Real: -10236.9 Nulls: [-10193.4, -10210.5, -10202.1, -10250.4, -10272.0]
Sample TCGA-AB-2812-03A failed loglikelihood. Real: -9765.36 Nulls: [-9814.8899999999994, -9836.2600000000002, -9780.7099999999991, -9742.3600000000006, -9771.6700000000001]
Sample TCGA-AG-3726-01A failed loglikelihood. Real: -10327.0 Nulls: [-10266.200000000001, -10268.4, -10272.0, -10264.299999999999, -10267.6]
Sample TCGA-AB-2955-03A failed loglikelihood. Real: -9641.34 Nulls: [-9646.4099999999999, -9625.0300000000007, -9647.0300000000007, -9706.5900000000001, -9673.7299999999996]
Sample TCGA-AA-3841-01A failed loglikelihood. Real: -10553.2 Nulls: [-10606.700000000001, -10569.4, -10583.0, -10565.5, -10551.299999999999]
Sample TCGA-A6-2679-01A failed loglikelihood. Real: -10007.2 Nulls: [-9803.2800000000007, -9786.0799999999999, -9765.7800000000007, -9801.2700000000004, -9797.4500000000007]
Sample TCGA-AA-A004-01A failed loglikelihood. Real: -9552.09 Nulls: [-9322.1200000000008, -9302.7199999999993, -9283.8299999999999, -9321.4599999999991, -9259.5200000000004]
Sample TCGA-AB-2912-03A failed loglikelihood. Real: -9890.82 Nulls: [-9897.8799999999992, -9932.1299999999992, -9937.6499999999996, -9889.8299999999999, -9911.8099999999995]
Sample TCGA-BP-4761-01A failed loglikelihood. Real: -10436.2 Nulls: [-10417.5, -10466.299999999999, -10447.9, -10454.5, -10402.799999999999]
Sample TCGA-50-6597-01A failed loglikelihood. Real: -10294.7 Nulls: [-10303.5, -10268.1, -10293.700000000001, -10346.6, -10287.1]
Sample TCGA-AB-2855-03A failed loglikelihood. Real: -9607.48 Nulls: [-9692.5300000000007, -9669.4099999999999, -9603.3899999999994, -9692.25, -9670.6000000000004]
Sample TCGA-AB-2959-03A failed loglikelihood. Real: -9959.56 Nulls: [-9953.2800000000007, -9983.1000000000004, -10006.6, -9970.3500000000004, -9990.5900000000001]
Sample TCGA-AG-3727-01A failed loglikelihood. Real: -10700.7 Nulls: [-10645.700000000001, -10634.0, -10586.200000000001, -10552.1, -10603.299999999999]
Sample TCGA-AZ-4308-01A failed loglikelihood. Real: -10400.6 Nulls: [-10414.299999999999, -10366.5, -10398.6, -10413.700000000001, -10395.9]
Sample TCGA-AB-2816-03A failed loglikelihood. Real: -9736.34 Nulls: [-9791.5699999999997, -9737.2700000000004, -9714.8700000000008, -9800.3099999999995, -9726.9599999999991]
Sample TCGA-AB-2806-03A failed loglikelihood. Real: -9806.04 Nulls: [-9828.8999999999996, -9785.8799999999992, -9813.5499999999993, -9786.1000000000004, -9875.5]
Sample TCGA-AG-3881-01A failed loglikelihood. Real: -10503.5 Nulls: [-10460.9, -10537.9, -10533.6, -10527.6, -10496.200000000001]
3470 out of 3531 samples passed loglikelihood verification.
syn1807620
syn2244294
syn1738365
syn1741290
syn1738372
syn1738370