TCGA Pancancer Freeze V3.0

Created By Kyle Ellrott kellrott
Description of sample Usage: https://sagebionetworks.jira.com/wiki/display/METAGENOMICS/TCGA+Pan+Cancer+Data+Analysis For example, to find every element related to the freeze: synapseQuery("select id, name from entity where freeze=='tcga_pancancer_v3'") To find all of the MAF files in the freeze: synapseQuery("select id, name from entity where freeze=='tcga_pancancer_v3' and fileType=='maf'") To get all of the paradigm results in the freeze: synapseQuery("select * from entity where freeze=='tcga_pancancer_v3' and dataSubType=='paradigm' ") To select all IlluminaHiSeq_RNASeqV2 normal tissue files: synapseQuery("select id, name from entity where freeze=='tcga_pancancer_v3' and platform=='IlluminaHiSeq_RNASeqV2' and sampleSetType=='normal'") Uterine Corpus Endometrioid Carcinoma Lung squamous cell carcinoma Rectum adenocarcinoma Ovarian serous cystadenocarcinoma Glioblastoma multiforme Kidney renal clear cell carcinoma Breast invasive carcinoma Colon adenocarcinoma